Variant report

Variant	rs12668615
Chromosome Location	chr7:107278686-107278687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1024401	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11761775	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12534598	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12674273	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468335	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2222846	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2701678	0.83[JPT][hapmap]
rs2701679	0.83[JPT][hapmap]
rs2712227	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs35868979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3823958	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4357220	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4727682	0.91[JPT][hapmap]
rs4730244	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs711442	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107263800-107278800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:107270000-107283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:107270200-107284600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:107271000-107283200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:107272600-107281600	Weak transcription	Fetal Brain Male	brain
6	chr7:107273200-107278800	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:107274200-107278800	Weak transcription	Dnd41	blood
8	chr7:107278000-107279000	Enhancers	Primary B cells from cord blood	blood
9	chr7:107278600-107278800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:107278600-107279200	Flanking Active TSS	GM12878-XiMat	blood
11	chr7:107278600-107279600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:107278600-107280200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:107278600-107280200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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