Variant report

Variant	rs10245645
Chromosome Location	chr7:13018483-13018484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12726106..12728466-chr7:13017401..13019789,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122644	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10229497	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10233654	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10237495	0.99[ASN][1000 genomes]
rs10242310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10244618	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248806	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249349	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10258241	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258251	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10258504	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10262322	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761318	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11762462	0.98[ASN][1000 genomes]
rs11762515	0.98[ASN][1000 genomes]
rs11764128	0.97[ASN][1000 genomes]
rs11764702	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770763	0.92[ASN][1000 genomes]
rs11770868	0.97[ASN][1000 genomes]
rs12539644	0.96[ASN][1000 genomes]
rs17166556	0.81[JPT][hapmap]
rs17166563	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17166573	0.96[ASN][1000 genomes]
rs2058614	0.94[ASN][1000 genomes]
rs2058615	0.96[ASN][1000 genomes]
rs28649846	0.96[ASN][1000 genomes]
rs4719343	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4719344	0.91[ASN][1000 genomes]
rs4719345	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721169	0.91[ASN][1000 genomes]
rs4721172	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4721173	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57602242	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58663405	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59392633	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60146115	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61485374	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66521516	0.96[ASN][1000 genomes]
rs66566418	0.96[ASN][1000 genomes]
rs67274609	0.98[ASN][1000 genomes]
rs67412081	0.96[ASN][1000 genomes]
rs6979666	0.97[ASN][1000 genomes]
rs6979683	0.96[ASN][1000 genomes]
rs73303004	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73303005	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73303018	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7807868	0.96[ASN][1000 genomes]
rs977201	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887642	chr7:12973609-13067198	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3389111	chr7:13006761-13030098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv5641	chr7:13012784-13030258	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13018000-13019200	Active TSS	Liver	Liver
2	chr7:13018400-13018800	Enhancers	A549	lung

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