Variant report

Variant	rs17166563
Chromosome Location	chr7:13026313-13026314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10229497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10237495	0.95[ASN][1000 genomes]
rs10242310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10244618	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10245645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10248806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258241	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10258504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10262322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11762462	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11762515	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11764128	0.98[ASN][1000 genomes]
rs11764702	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770763	0.94[ASN][1000 genomes]
rs11770868	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12539644	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17166556	0.82[JPT][hapmap]
rs17166573	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2058614	0.95[ASN][1000 genomes]
rs2058615	0.94[ASN][1000 genomes]
rs28649846	0.94[ASN][1000 genomes]
rs4719343	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4719344	0.92[ASN][1000 genomes]
rs4719345	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4721169	0.92[ASN][1000 genomes]
rs4721172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57602242	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58663405	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59392633	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60146115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61485374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66521516	0.94[ASN][1000 genomes]
rs66566418	0.94[ASN][1000 genomes]
rs67274609	0.95[ASN][1000 genomes]
rs67412081	0.94[ASN][1000 genomes]
rs6979666	0.97[ASN][1000 genomes]
rs6979683	0.98[ASN][1000 genomes]
rs73303004	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73303005	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73303018	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7807868	0.99[ASN][1000 genomes]
rs977201	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887642	chr7:12973609-13067198	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3389111	chr7:13006761-13030098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv5641	chr7:13012784-13030258	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3497866	chr7:13020611-13029396	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3497867	chr7:13020977-13029875	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3497869	chr7:13021402-13029775	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv818484	chr7:13021705-13027695	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3497865	chr7:13021989-13028656	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3477129	chr7:13021995-13028685	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3477131	chr7:13021995-13028685	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3497861	chr7:13022000-13028609	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3497862	chr7:13022028-13028675	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3497868	chr7:13022031-13028614	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3497863	chr7:13022043-13028600	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3402708	chr7:13022063-13028570	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv3497870	chr7:13022097-13028560	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3497871	chr7:13022102-13028555	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv2421827	chr7:13022109-13028285	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv11840	chr7:13022272-13028540	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv33094	chr7:13024178-13027664	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv517443	chr7:13024467-13027695	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv606239	chr7:13024467-13027695	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv606240	chr7:13024467-13028119	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv606241	chr7:13024467-13028192	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv606242	chr7:13024467-13028196	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv606243	chr7:13024467-13028504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv606244	chr7:13024467-13028974	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv606245	chr7:13024977-13028504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv606246	chr7:13026143-13028504	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13020000-13027000	Weak transcription	A549	lung
2	chr7:13024400-13027400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:13024800-13026400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:13024800-13027200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:13024800-13027200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:13025000-13027000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:13025200-13026400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:13025200-13027800	Weak transcription	Pancreas	Pancrea
9	chr7:13025200-13029000	Weak transcription	Liver	Liver
10	chr7:13026000-13026400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:13026200-13027400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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