Variant report

Variant	rs17166573
Chromosome Location	chr7:13029136-13029137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13023717..13025887-chr7:13027646..13029322,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10229497	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10233654	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10237495	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242310	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10244618	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10245645	0.96[ASN][1000 genomes]
rs10248806	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10249349	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10258241	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10258251	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10258504	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10262322	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11761318	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11762462	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11762515	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11764128	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11764702	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11770763	0.95[ASN][1000 genomes]
rs11770868	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539644	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17166563	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2058614	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2058615	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28649846	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719344	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4719345	0.99[ASN][1000 genomes]
rs4721169	0.91[ASN][1000 genomes]
rs4721172	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4721173	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs57602242	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58663405	0.97[ASN][1000 genomes]
rs59392633	0.90[ASN][1000 genomes]
rs60146115	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61485374	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs66521516	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66566418	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67274609	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67412081	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6979666	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6979683	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73303004	0.95[ASN][1000 genomes]
rs73303005	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73303018	1.00[ASN][1000 genomes]
rs7807868	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977201	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887642	chr7:12973609-13067198	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3389111	chr7:13006761-13030098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv5641	chr7:13012784-13030258	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3497866	chr7:13020611-13029396	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3497867	chr7:13020977-13029875	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3497869	chr7:13021402-13029775	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13028800-13029400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:13028800-13029400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:13029000-13029400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:13029000-13029400	Enhancers	NHEK	skin
5	chr7:13029000-13029600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:13029000-13030200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:13029000-13030200	Enhancers	Liver	Liver
8	chr7:13029000-13030600	Enhancers	A549	lung

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