Variant report
| Variant | rs10245876 |
|---|---|
| Chromosome Location | chr7:78767396-78767397 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:78749811..78752141-chr7:78766151..78767665,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10224247 | 0.80[EUR][1000 genomes] |
| rs10255742 | 0.81[ASN][1000 genomes] |
| rs10953786 | 0.82[EUR][1000 genomes] |
| rs12112164 | 0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12669524 | 0.81[EUR][1000 genomes] |
| rs12706039 | 0.81[EUR][1000 genomes] |
| rs13222070 | 0.81[EUR][1000 genomes] |
| rs13225710 | 0.83[EUR][1000 genomes] |
| rs13239380 | 0.81[EUR][1000 genomes] |
| rs1990433 | 0.81[ASN][1000 genomes] |
| rs2024254 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2191808 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2191811 | 0.80[EUR][1000 genomes] |
| rs4730678 | 0.81[ASN][1000 genomes] |
| rs4730680 | 0.81[ASN][1000 genomes] |
| rs6466519 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6466537 | 0.81[EUR][1000 genomes] |
| rs6950691 | 0.82[EUR][1000 genomes] |
| rs6957950 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6967793 | 0.86[EUR][1000 genomes] |
| rs7790650 | 0.81[ASN][1000 genomes] |
| rs7793860 | 0.81[EUR][1000 genomes] |
| rs7794136 | 0.81[EUR][1000 genomes] |
| rs7795498 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7802991 | 0.81[EUR][1000 genomes] |
| rs7803630 | 0.80[EUR][1000 genomes] |
| rs983050 | 0.82[EUR][1000 genomes] |
| rs983846 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv888510 | chr7:78742376-78865618 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:78767000-78767600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr7:78767200-78768000 | Enhancers | Muscle Satellite Cultured Cells | -- |
