Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78749811..78752141-chr7:78766151..78767665,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10231844	0.80[LWK][hapmap];0.96[YRI][hapmap]
rs10245876	0.81[ASN][1000 genomes]
rs10255710	0.89[GIH][hapmap]
rs10267057	0.92[YRI][hapmap]
rs10277622	1.00[YRI][hapmap]
rs10280055	0.89[GIH][hapmap]
rs10953782	0.96[YRI][hapmap]
rs10953783	0.80[GIH][hapmap]
rs11760355	0.82[GIH][hapmap]
rs11767464	0.86[GIH][hapmap]
rs12112164	0.88[JPT][hapmap]
rs12531031	0.84[GIH][hapmap]
rs12668450	0.81[JPT][hapmap];0.81[MEX][hapmap]
rs1468660	0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap]
rs17152025	0.80[LWK][hapmap];0.92[YRI][hapmap]
rs1990432	0.84[GIH][hapmap]
rs1990433	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.90[ASN][1000 genomes]
rs2024254	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs2191808	0.88[JPT][hapmap]
rs2215585	0.87[GIH][hapmap]
rs2364343	1.00[YRI][hapmap]
rs4020771	0.84[GIH][hapmap]
rs4730678	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4730680	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4730688	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6466535	0.81[JPT][hapmap]
rs6950691	0.81[MEX][hapmap]
rs6957950	0.88[JPT][hapmap];0.81[MEX][hapmap]
rs7787597	0.84[GIH][hapmap]
rs7789660	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7790650	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs7793860	0.81[JPT][hapmap]
rs7806589	0.80[LWK][hapmap];0.92[YRI][hapmap]
rs983846	0.88[JPT][hapmap]
rs9886257	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78767000-78767600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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