Variant report

Variant	rs7787597
Chromosome Location	chr7:78775199-78775200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10255710	0.84[GIH][hapmap]
rs10255742	0.84[GIH][hapmap]
rs10280055	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs10953780	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953783	0.95[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11760355	0.94[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11767464	0.86[CHD][hapmap];0.88[TSI][hapmap]
rs11982713	0.92[EUR][1000 genomes]
rs12112164	0.84[CEU][hapmap];0.91[GIH][hapmap]
rs12534678	0.84[EUR][1000 genomes]
rs12535987	0.82[JPT][hapmap];0.83[MEX][hapmap]
rs12668450	0.87[GIH][hapmap]
rs12706023	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13222189	0.85[EUR][1000 genomes]
rs13222396	0.85[EUR][1000 genomes]
rs13309906	0.90[EUR][1000 genomes]
rs1468660	0.82[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1990432	0.95[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1990433	0.84[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs2024253	0.81[AMR][1000 genomes]
rs2024254	0.80[GIH][hapmap]
rs2191807	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2191808	0.84[CEU][hapmap]
rs2215584	0.85[EUR][1000 genomes]
rs2302441	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302442	0.84[CEU][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707261	0.85[EUR][1000 genomes]
rs4020771	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4573181	0.95[CEU][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs4727816	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4730678	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4730680	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4730688	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs6466510	0.90[JPT][hapmap]
rs6466533	0.95[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6466535	0.85[GIH][hapmap]
rs6950691	0.87[GIH][hapmap]
rs6957950	0.84[CEU][hapmap];0.93[GIH][hapmap]
rs6966617	0.95[JPT][hapmap]
rs6967793	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6971099	0.89[GIH][hapmap];0.86[JPT][hapmap]
rs7788638	0.91[EUR][1000 genomes]
rs7789016	0.91[JPT][hapmap]
rs7789660	0.84[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs7790650	0.89[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs7791658	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs7793860	0.85[GIH][hapmap]
rs7801546	0.84[EUR][1000 genomes]
rs983846	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78773000-78782000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:78775000-78775200	Enhancers	NHDF-Ad	bronchial
3	chr7:78775000-78775400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:78775000-78775400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:78775000-78775400	Enhancers	Brain Hippocampus Middle	brain
6	chr7:78775000-78781400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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