Variant report
| Variant | rs7789016 |
|---|---|
| Chromosome Location | chr7:78762630-78762631 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10255710 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10280055 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10953780 | 0.91[JPT][hapmap] |
| rs10953783 | 0.82[JPT][hapmap] |
| rs11760355 | 0.91[JPT][hapmap] |
| rs11767464 | 0.90[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs12531031 | 0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap] |
| rs12674038 | 0.85[CEU][hapmap] |
| rs12706007 | 0.80[CEU][hapmap];0.86[CHB][hapmap] |
| rs12706023 | 0.91[JPT][hapmap] |
| rs13243641 | 0.86[CEU][hapmap] |
| rs1990432 | 0.91[JPT][hapmap] |
| rs2191806 | 0.85[CEU][hapmap] |
| rs2215581 | 0.81[CEU][hapmap] |
| rs2215585 | 0.80[CEU][hapmap];0.91[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2302441 | 0.91[JPT][hapmap] |
| rs4020771 | 0.91[JPT][hapmap] |
| rs4727816 | 0.91[JPT][hapmap] |
| rs6466510 | 0.91[CEU][hapmap];0.91[JPT][hapmap] |
| rs6466533 | 0.82[JPT][hapmap] |
| rs6966617 | 0.95[JPT][hapmap] |
| rs6967793 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs740967 | 1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7787597 | 0.91[JPT][hapmap] |
| rs7790562 | 0.85[CEU][hapmap] |
| rs7791658 | 0.83[JPT][hapmap] |
| rs7793056 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7810534 | 0.90[CEU][hapmap];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv888510 | chr7:78742376-78865618 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
