Variant report

Variant	rs12674038
Chromosome Location	chr7:78732358-78732359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1013289	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1013571	0.83[GIH][hapmap]
rs1013572	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1016189	0.90[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes]
rs10253328	0.83[GIH][hapmap]
rs10255710	0.85[CEU][hapmap]
rs10280055	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs12530795	0.81[JPT][hapmap]
rs12705965	0.81[GIH][hapmap]
rs13243641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17151928	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1860695	0.81[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2041484	0.83[GIH][hapmap]
rs2041487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs2159685	0.85[GIH][hapmap]
rs2191719	0.83[GIH][hapmap]
rs2191722	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2191723	0.95[EUR][1000 genomes]
rs2191806	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2215545	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2215581	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs2886052	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2886053	0.98[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs34717107	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6466491	0.83[GIH][hapmap]
rs6942475	0.83[GIH][hapmap]
rs6956003	0.86[JPT][hapmap]
rs6959534	0.96[EUR][1000 genomes]
rs6977105	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs6978465	0.84[EUR][1000 genomes]
rs740967	0.85[CEU][hapmap]
rs7789016	0.85[CEU][hapmap]
rs7789445	0.83[GIH][hapmap]
rs7790562	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7796560	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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