Variant report

Variant	rs17151928
Chromosome Location	chr7:78702911-78702912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1013289	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1013571	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs1013572	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10253328	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs11531591	0.87[CHB][hapmap]
rs11771071	0.82[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs12530795	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12674038	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12705965	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs13243641	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1988318	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs2041484	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs2041487	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2159685	0.87[CHB][hapmap]
rs2191721	0.87[CHB][hapmap]
rs2191722	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs2215545	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs2886052	0.84[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34717107	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61324116	0.80[ASN][1000 genomes]
rs6466491	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs6942475	0.87[CHB][hapmap]
rs6956003	0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6977105	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs73143433	0.80[ASN][1000 genomes]
rs7789445	0.87[CHB][hapmap]
rs7790562	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7794889	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3347597	chr7:78694350-78711035	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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