Variant report
| Variant | rs2041487 |
|---|---|
| Chromosome Location | chr7:78731338-78731339 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1013289 | 0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs1013572 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1016189 | 0.89[LWK][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs12530795 | 0.81[JPT][hapmap] |
| rs12674038 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap] |
| rs13243641 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17151928 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs1860695 | 0.87[CHB][hapmap];0.87[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs2191722 | 0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs2191723 | 0.82[EUR][1000 genomes] |
| rs2191806 | 0.89[LWK][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs2215545 | 0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs2215581 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2886052 | 0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2886053 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs34717107 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6956003 | 0.86[JPT][hapmap] |
| rs6959534 | 0.83[EUR][1000 genomes] |
| rs6977105 | 0.84[ASW][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs6978465 | 0.95[EUR][1000 genomes] |
| rs7790562 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
