Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1013289	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1013571	0.83[CHB][hapmap]
rs1013572	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11531591	0.84[CHB][hapmap]
rs12530795	0.86[JPT][hapmap]
rs12674038	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13243641	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17151928	0.84[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs1988318	0.84[CHB][hapmap]
rs2041484	0.83[CHB][hapmap]
rs2041487	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2159685	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs2191721	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs2191722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2215543	0.81[ASN][1000 genomes]
rs2215544	0.81[ASN][1000 genomes]
rs2215545	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2886053	0.89[CEU][hapmap]
rs34717107	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942475	0.83[CHB][hapmap]
rs6956003	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6977105	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7789445	0.83[CHB][hapmap]
rs7790562	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7794889	0.84[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78725000-78726400	Enhancers	HUVEC	blood vessel
2	chr7:78725200-78725800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:78725200-78726400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:78725400-78725800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:78725400-78725800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:78725400-78725800	Enhancers	HMEC	breast
7	chr7:78725400-78725800	Enhancers	NH-A	brain
8	chr7:78725400-78725800	Enhancers	NHLF	lung
9	chr7:78725400-78726400	Enhancers	Osteobl	bone

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