Variant report
| Variant | rs2191722 |
|---|---|
| Chromosome Location | chr7:78728407-78728408 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1013289 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1013571 | 0.83[CHB][hapmap] |
| rs1013572 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11531591 | 0.84[CHB][hapmap] |
| rs12530795 | 0.82[JPT][hapmap] |
| rs12674038 | 0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs13243641 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17151928 | 0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap] |
| rs1988318 | 0.84[CHB][hapmap] |
| rs2041484 | 0.83[CHB][hapmap] |
| rs2041487 | 0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs2159685 | 0.83[CHB][hapmap] |
| rs2191721 | 0.84[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2215545 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2886052 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2886053 | 0.89[CEU][hapmap] |
| rs34717107 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6942475 | 0.83[CHB][hapmap] |
| rs6956003 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6977105 | 0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs7789445 | 0.83[CHB][hapmap] |
| rs7790562 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7794889 | 0.84[CHB][hapmap];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
