Variant report

Variant	rs6956003
Chromosome Location	chr7:78690012-78690013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1013289	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1013571	0.93[GIH][hapmap]
rs1013572	0.83[ASW][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs10253328	0.93[GIH][hapmap]
rs12530795	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12674038	0.86[JPT][hapmap]
rs12705965	0.95[GIH][hapmap]
rs13243641	0.86[JPT][hapmap]
rs13247319	0.80[ASN][1000 genomes]
rs17151928	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2041484	0.93[GIH][hapmap]
rs2041487	0.86[JPT][hapmap]
rs2159685	0.91[GIH][hapmap]
rs2191719	0.93[GIH][hapmap]
rs2191722	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2215545	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2886052	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs34717107	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs36035953	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6466491	0.93[GIH][hapmap]
rs6942475	0.93[GIH][hapmap]
rs6977105	0.91[ASW][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap]
rs7789445	0.93[GIH][hapmap]
rs7790562	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78680800-78690800	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78689800-78690200	Enhancers	Pancreatic Islets	Pancreatic Islet

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