Variant report

Variant	rs34717107
Chromosome Location	chr4:170469721-170469722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1013572	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11771071	0.90[EUR][1000 genomes]
rs12705965	0.90[EUR][1000 genomes]
rs13243641	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2886052	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6956003	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7790562	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031278	chr4:170292904-170661321	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv537348	chr4:170292904-170661321	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:170370200-170481200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:170414200-170470000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:170421800-170471800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:170422000-170492400	Weak transcription	HMEC	breast
5	chr4:170423400-170475000	Weak transcription	HSMMtube	muscle
6	chr4:170423400-170476600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:170424200-170492400	Weak transcription	NHEK	skin
8	chr4:170424400-170475600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:170426000-170475800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:170427000-170531400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:170429000-170496400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:170440200-170469800	Weak transcription	Gastric	stomach
13	chr4:170440200-170469800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:170442600-170470200	Weak transcription	Right Ventricle	heart
15	chr4:170442600-170473600	Weak transcription	Colonic Mucosa	Colon
16	chr4:170443000-170470200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:170444000-170470000	Weak transcription	Aorta	Aorta
18	chr4:170444000-170474800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:170444600-170471600	Weak transcription	K562	blood
20	chr4:170445800-170471600	Weak transcription	Fetal Kidney	kidney
21	chr4:170448600-170471200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:170449200-170482800	Weak transcription	Spleen	Spleen
23	chr4:170449400-170525400	Weak transcription	NHLF	lung
24	chr4:170449600-170471800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:170451400-170471200	Weak transcription	Brain Substantia Nigra	brain
26	chr4:170452000-170474600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:170452200-170503400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:170453200-170474800	Weak transcription	HSMM	muscle
29	chr4:170453400-170473600	Weak transcription	HUVEC	blood vessel
30	chr4:170454200-170470000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:170454400-170471600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:170454600-170471000	Weak transcription	Dnd41	blood
33	chr4:170454600-170474800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:170454600-170494200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:170455000-170496400	Weak transcription	Brain Angular Gyrus	brain
36	chr4:170455800-170495000	Weak transcription	Ovary	ovary
37	chr4:170456400-170469800	Weak transcription	Left Ventricle	heart
38	chr4:170457400-170470000	Weak transcription	Thymus	Thymus
39	chr4:170457400-170473600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:170457400-170478800	Weak transcription	Pancreas	Pancrea
41	chr4:170457800-170470000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:170458800-170471400	Weak transcription	Fetal Heart	heart
43	chr4:170459000-170469800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:170459000-170470200	Weak transcription	Adipose Nuclei	Adipose
45	chr4:170459000-170473600	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:170459200-170471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:170460600-170473200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:170463200-170470000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:170463200-170470200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:170463200-170475600	Weak transcription	Osteobl	bone

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