Variant report
Variant | rs11771071 |
---|---|
Chromosome Location | chr7:78690509-78690510 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1013571 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1013572 | 0.86[EUR][1000 genomes] |
rs10253328 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11531591 | 0.96[CHB][hapmap];0.90[JPT][hapmap] |
rs12705965 | 1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13247319 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17151928 | 0.82[CEU][hapmap];0.83[CHB][hapmap] |
rs1860695 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
rs1988318 | 1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap] |
rs2041484 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2159685 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rs2191719 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs2191721 | 0.96[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2215543 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2215544 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2364341 | 0.95[JPT][hapmap] |
rs34717107 | 0.90[EUR][1000 genomes] |
rs61324116 | 0.88[ASN][1000 genomes] |
rs6466491 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6942475 | 0.95[CHB][hapmap];0.94[JPT][hapmap] |
rs6949412 | 0.80[CEU][hapmap] |
rs6977105 | 0.89[CEU][hapmap] |
rs73143433 | 0.88[ASN][1000 genomes] |
rs7789445 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
rs7794889 | 0.96[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | nsv482826 | chr7:78548319-78717605 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv471642 | chr7:78548320-78717605 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv831040 | chr7:78623195-78831998 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:78680800-78690800 | Weak transcription | Brain Substantia Nigra | brain |