Variant report

Variant	rs7794889
Chromosome Location	chr7:78720860-78720861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1013289	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs1013571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1013572	0.83[CHB][hapmap]
rs10253328	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11531591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11771071	0.96[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12705965	0.84[JPT][hapmap];0.83[AMR][1000 genomes]
rs13247319	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17151928	0.87[CHB][hapmap]
rs1860695	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1988318	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2041484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2159685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191719	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2191721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191722	0.84[CHB][hapmap]
rs2215543	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215544	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215545	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs2364341	0.88[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs2886052	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs61324116	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466491	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6942475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73143433	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7789445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78719800-78721400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:78719800-78721400	Enhancers	HMEC	breast
3	chr7:78720000-78721400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:78720000-78722200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:78720200-78721000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:78720200-78721400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:78720200-78722000	Enhancers	Osteobl	bone
8	chr7:78720400-78722400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:78720400-78725400	Weak transcription	NHLF	lung
10	chr7:78720600-78721000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:78720600-78725000	Weak transcription	HUVEC	blood vessel
12	chr7:78720600-78725200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:78720800-78725400	Weak transcription	NH-A	brain

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