Variant report

Variant	rs10280055
Chromosome Location	chr7:78750133-78750134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78749811..78752141-chr7:78766151..78767665,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10255710	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10255742	0.89[GIH][hapmap]
rs10953783	0.83[MEX][hapmap]
rs11760355	0.80[GIH][hapmap];0.83[MEX][hapmap]
rs11767464	0.90[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12112164	0.82[GIH][hapmap]
rs12531031	0.94[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap]
rs12674038	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs12706007	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13243641	0.85[CEU][hapmap]
rs1990432	0.82[GIH][hapmap];0.83[MEX][hapmap]
rs1990433	0.82[GIH][hapmap]
rs2191806	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs2215581	0.80[CEU][hapmap]
rs2215585	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4020771	0.82[GIH][hapmap];0.83[MEX][hapmap]
rs6466510	0.90[CEU][hapmap]
rs6466533	0.83[MEX][hapmap]
rs6957950	0.84[GIH][hapmap]
rs740967	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787597	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs7789016	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap]
rs7790562	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs7790650	0.82[GIH][hapmap]
rs7793056	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7810534	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78748400-78751400	Weak transcription	HUVEC	blood vessel
2	chr7:78749600-78750400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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