Variant report

Variant	rs6466533
Chromosome Location	chr7:78792892-78792893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10280055	0.83[MEX][hapmap]
rs10953780	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10953783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760355	0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11767464	0.82[MEX][hapmap];0.81[TSI][hapmap]
rs11982713	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12112164	0.84[GIH][hapmap]
rs12534678	0.93[EUR][1000 genomes]
rs12535987	0.82[JPT][hapmap];0.87[MEX][hapmap]
rs12668450	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs12706023	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs13222189	0.87[EUR][1000 genomes]
rs13222396	0.87[EUR][1000 genomes]
rs13239380	0.85[CEU][hapmap]
rs13309906	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468660	0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs1990432	0.93[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1990433	0.93[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs2024253	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2024254	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs2191807	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2215584	0.87[EUR][1000 genomes]
rs2302441	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs2302442	0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs34707261	0.87[EUR][1000 genomes]
rs4020771	0.95[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4573181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727816	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs4730678	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs4730680	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs4730688	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6466510	0.81[JPT][hapmap]
rs6466535	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs6950691	0.85[CEU][hapmap];0.93[GIH][hapmap]
rs6957950	0.87[GIH][hapmap]
rs6966617	0.86[JPT][hapmap]
rs6967793	0.90[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs6971099	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7787597	0.95[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7788638	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7789016	0.82[JPT][hapmap]
rs7789660	0.90[CEU][hapmap];0.98[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs7790650	0.85[CEU][hapmap];0.93[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs7791658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7793860	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs7801546	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033988	chr7:78778675-78851897	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv5806	chr7:78780156-78855716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888511	chr7:78784444-78851126	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1023323	chr7:78785484-78808172	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1793308	chr7:78789702-78796945	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78781800-78794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78786000-78794800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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