Variant report

Variant	rs6967793
Chromosome Location	chr7:78780749-78780750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10224247	0.81[EUR][1000 genomes]
rs10245876	0.86[EUR][1000 genomes]
rs10953780	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10953783	0.90[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs10953786	0.83[EUR][1000 genomes]
rs11760355	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12112164	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs12668450	0.84[CEU][hapmap]
rs12669524	0.82[EUR][1000 genomes]
rs12706023	0.95[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12706039	0.82[EUR][1000 genomes]
rs13222070	0.82[EUR][1000 genomes]
rs13225710	0.84[EUR][1000 genomes]
rs13239380	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1990432	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1990433	0.89[CEU][hapmap]
rs2024253	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2024254	0.84[CEU][hapmap]
rs2191807	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2191808	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2191811	0.81[EUR][1000 genomes]
rs2302441	0.95[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2302442	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4020771	0.95[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4573181	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs4727816	0.95[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4730678	0.83[CEU][hapmap]
rs4730680	0.83[CEU][hapmap]
rs6466510	0.86[JPT][hapmap]
rs6466519	0.91[EUR][1000 genomes]
rs6466533	0.90[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs6466535	0.84[CEU][hapmap]
rs6466537	0.82[EUR][1000 genomes]
rs6950691	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6957950	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs6966617	0.91[JPT][hapmap]
rs6971099	0.82[JPT][hapmap]
rs7787597	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7789016	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7790650	0.84[CEU][hapmap]
rs7791658	0.90[CEU][hapmap];0.87[JPT][hapmap]
rs7793860	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7794136	0.82[EUR][1000 genomes]
rs7795498	0.81[EUR][1000 genomes]
rs7802991	0.82[EUR][1000 genomes]
rs7803630	0.81[EUR][1000 genomes]
rs983050	0.83[EUR][1000 genomes]
rs983846	0.89[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033988	chr7:78778675-78851897	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv5806	chr7:78780156-78855716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78773000-78782000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:78775000-78781400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78780000-78780800	Enhancers	Muscle Satellite Cultured Cells	--

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