Variant report

Variant	rs10953780
Chromosome Location	chr7:78777114-78777115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78776964..78780681-chr7:78782955..78785203,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10953783	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11760355	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767464	0.84[CEU][hapmap]
rs11982713	0.92[EUR][1000 genomes]
rs12112164	0.84[CEU][hapmap]
rs12534678	0.84[EUR][1000 genomes]
rs12535987	0.82[JPT][hapmap]
rs12706023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13222189	0.85[EUR][1000 genomes]
rs13222396	0.85[EUR][1000 genomes]
rs13309906	0.90[EUR][1000 genomes]
rs1468660	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs1990432	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1990433	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs2024253	0.81[AMR][1000 genomes]
rs2191807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2191808	0.84[CEU][hapmap]
rs2215584	0.85[EUR][1000 genomes]
rs2302441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302442	0.84[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34707261	0.85[EUR][1000 genomes]
rs4020771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4573181	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs4727816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730678	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4730680	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4730688	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs6466510	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs6466533	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6957950	0.84[CEU][hapmap]
rs6966617	0.95[JPT][hapmap]
rs6967793	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6971099	0.86[JPT][hapmap]
rs7787597	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788638	0.91[EUR][1000 genomes]
rs7789016	0.91[JPT][hapmap]
rs7789660	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7790650	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs7791658	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7801546	0.84[EUR][1000 genomes]
rs983846	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78773000-78782000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:78775000-78781400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78775400-78778000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:78775400-78778800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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