Variant report

Variant	rs10245984
Chromosome Location	chr7:136778253-136778254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10085564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228806	0.90[AFR][1000 genomes]
rs10242047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262024	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281273	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1424544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1593208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1834167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28811691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59798894	1.00[AMR][1000 genomes]
rs6467698	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6945619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946616	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791633	1.00[AMR][1000 genomes]
rs7791739	1.00[AMR][1000 genomes]
rs7807052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7808653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv889237	chr7:136715167-136793350	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136772000-136778400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:136777000-136781400	Weak transcription	Fetal Heart	heart
3	chr7:136778000-136778800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links