Variant report

Variant	rs59798894
Chromosome Location	chr7:136794835-136794836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10085564	1.00[AMR][1000 genomes]
rs10226104	1.00[AMR][1000 genomes]
rs10242047	1.00[AMR][1000 genomes]
rs10244030	1.00[AMR][1000 genomes]
rs10245984	1.00[AMR][1000 genomes]
rs10255189	1.00[AMR][1000 genomes]
rs10262024	1.00[AMR][1000 genomes]
rs10268176	1.00[AMR][1000 genomes]
rs10273686	1.00[AMR][1000 genomes]
rs10273942	1.00[AMR][1000 genomes]
rs10274020	1.00[AMR][1000 genomes]
rs10280895	1.00[AMR][1000 genomes]
rs10281273	1.00[AMR][1000 genomes]
rs10281394	1.00[AMR][1000 genomes]
rs1424544	1.00[AMR][1000 genomes]
rs1593208	1.00[AMR][1000 genomes]
rs1834167	1.00[AMR][1000 genomes]
rs28811691	1.00[AMR][1000 genomes]
rs6467698	1.00[AMR][1000 genomes]
rs6945619	1.00[AMR][1000 genomes]
rs6946564	1.00[AMR][1000 genomes]
rs6946616	1.00[AMR][1000 genomes]
rs6954615	1.00[AMR][1000 genomes]
rs6972478	1.00[AMR][1000 genomes]
rs73160488	1.00[AMR][1000 genomes]
rs7777400	1.00[AMR][1000 genomes]
rs7786620	1.00[AMR][1000 genomes]
rs7787687	1.00[AMR][1000 genomes]
rs7791633	1.00[AMR][1000 genomes]
rs7791739	1.00[AMR][1000 genomes]
rs7807052	1.00[AMR][1000 genomes]
rs7808653	1.00[AMR][1000 genomes]
rs7809277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136782400-136795000	Weak transcription	Fetal Heart	heart
2	chr7:136793400-136796400	Enhancers	NHLF	lung
3	chr7:136794200-136795000	Enhancers	Fetal Brain Female	brain
4	chr7:136794400-136795600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr7:136794600-136795000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:136794600-136795000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:136794600-136795000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:136794600-136795000	Enhancers	Osteobl	bone
9	chr7:136794800-136795200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:136794800-136795200	Enhancers	NHDF-Ad	bronchial
11	chr7:136794800-136795400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:136794800-136795400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:136794800-136795400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:136794800-136795400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:136794800-136795400	Enhancers	HMEC	breast
16	chr7:136794800-136795400	Enhancers	NH-A	brain
17	chr7:136794800-136795600	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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