Variant report

Variant	rs10273942
Chromosome Location	chr7:136769133-136769134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136768600..136771525-chr7:136904072..136906566,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10085564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228806	0.86[AFR][1000 genomes]
rs10242047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268176	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274020	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281394	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1424544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1593208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1834167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28811691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59798894	1.00[AMR][1000 genomes]
rs6467698	1.00[AMR][1000 genomes]
rs6945619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6946616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791633	1.00[AMR][1000 genomes]
rs7791739	1.00[AMR][1000 genomes]
rs7807052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7808653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv889237	chr7:136715167-136793350	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136764200-136771600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:136765400-136769800	Enhancers	Fetal Heart	heart
3	chr7:136766800-136771600	Weak transcription	HMEC	breast
4	chr7:136767400-136769200	Weak transcription	NHLF	lung
5	chr7:136767600-136769400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:136767600-136769400	Weak transcription	Osteobl	bone
7	chr7:136767600-136769600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:136768800-136769600	Enhancers	Stomach Smooth Muscle	stomach
9	chr7:136768800-136770000	Enhancers	Colon Smooth Muscle	Colon
10	chr7:136768800-136770000	Enhancers	Rectal Smooth Muscle	rectum
11	chr7:136768800-136770400	Enhancers	Fetal Brain Male	brain
12	chr7:136769000-136769200	Enhancers	Fetal Stomach	stomach
13	chr7:136769000-136770000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr7:136769000-136770600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links