Variant report

Variant	rs10247439
Chromosome Location	chr7:103356296-103356297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10245257	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs123712	0.89[JPT][hapmap]
rs123714	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs12667604	0.81[EUR][1000 genomes]
rs2109697	0.89[JPT][hapmap];0.81[MEX][hapmap]
rs2191702	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs2249372	0.88[CEU][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap]
rs2299366	0.95[ASN][1000 genomes]
rs362642	0.84[JPT][hapmap]
rs362644	0.89[JPT][hapmap]
rs362695	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs3808024	0.88[CEU][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap]
rs496907	0.93[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs722613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs995450	0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10247439	PRKAR2B	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103350800-103358200	Weak transcription	Hela-S3	cervix
3	chr7:103350800-103358600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:103351200-103359000	Weak transcription	NHDF-Ad	bronchial
5	chr7:103351400-103359600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:103352600-103358000	Weak transcription	HUVEC	blood vessel
7	chr7:103354600-103358600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:103354600-103358800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:103355400-103374800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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