Variant report

Variant	rs496907
Chromosome Location	chr7:103362484-103362485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10245257	0.83[JPT][hapmap]
rs10247439	0.93[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs123712	0.83[JPT][hapmap]
rs123714	0.83[JPT][hapmap];0.82[TSI][hapmap]
rs2109697	0.83[JPT][hapmap]
rs2191702	0.83[JPT][hapmap]
rs2249372	0.83[JPT][hapmap];0.85[TSI][hapmap]
rs2299366	0.93[ASN][1000 genomes]
rs362642	0.89[JPT][hapmap]
rs362695	0.83[JPT][hapmap]
rs3808024	0.88[JPT][hapmap];0.88[TSI][hapmap]
rs622198	0.81[EUR][1000 genomes]
rs722613	0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs995450	0.96[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103355400-103374800	Weak transcription	HepG2	liver
2	chr7:103359400-103363400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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