Variant report

Variant	rs10249336
Chromosome Location	chr7:128964149-128964150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10235589	0.86[AFR][1000 genomes]
rs10255583	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10269495	0.86[AFR][1000 genomes]
rs10281269	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs12706870	0.84[EUR][1000 genomes]
rs12706872	0.92[EUR][1000 genomes]
rs12706873	0.92[EUR][1000 genomes]
rs12706874	0.92[EUR][1000 genomes]
rs12706881	0.80[EUR][1000 genomes]
rs13221770	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13223446	1.00[CEU][hapmap]
rs13225516	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13226919	0.92[EUR][1000 genomes]
rs13229264	0.84[EUR][1000 genomes]
rs13231139	1.00[CEU][hapmap]
rs13235047	0.84[EUR][1000 genomes]
rs13236334	0.84[EUR][1000 genomes]
rs13240434	0.84[EUR][1000 genomes]
rs13240723	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs13240872	0.92[EUR][1000 genomes]
rs13241894	0.84[EUR][1000 genomes]
rs13242728	1.00[CEU][hapmap]
rs13242765	1.00[CEU][hapmap]
rs13245699	0.80[EUR][1000 genomes]
rs13245719	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13246455	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1405475	0.83[AFR][1000 genomes]
rs1526899	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs1549788	0.81[AFR][1000 genomes]
rs1609043	0.83[AFR][1000 genomes]
rs2016607	1.00[CEU][hapmap]
rs2402947	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs2566875	0.81[AFR][1000 genomes]
rs2566881	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs2566882	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs2694575	0.84[AFR][1000 genomes]
rs2694576	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs2694577	0.83[AFR][1000 genomes]
rs2694583	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs2694591	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs2718085	0.81[AFR][1000 genomes]
rs2718090	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs2718091	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs2718097	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs2718099	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2718100	0.82[AFR][1000 genomes]
rs34026893	0.92[EUR][1000 genomes]
rs34071868	0.80[EUR][1000 genomes]
rs34100080	0.84[EUR][1000 genomes]
rs34134934	0.84[EUR][1000 genomes]
rs34534484	0.92[EUR][1000 genomes]
rs34535486	0.84[EUR][1000 genomes]
rs34643315	0.84[EUR][1000 genomes]
rs34651338	0.92[EUR][1000 genomes]
rs34659337	0.84[EUR][1000 genomes]
rs34691806	0.92[EUR][1000 genomes]
rs34698607	0.85[EUR][1000 genomes]
rs34721141	0.92[EUR][1000 genomes]
rs34853082	0.84[EUR][1000 genomes]
rs34867290	0.92[EUR][1000 genomes]
rs34890000	0.92[EUR][1000 genomes]
rs35120382	0.92[EUR][1000 genomes]
rs35239026	0.84[EUR][1000 genomes]
rs35381790	0.92[EUR][1000 genomes]
rs35386880	0.92[EUR][1000 genomes]
rs35506900	0.92[EUR][1000 genomes]
rs35552948	0.92[EUR][1000 genomes]
rs35654453	0.92[EUR][1000 genomes]
rs35695777	0.84[EUR][1000 genomes]
rs35730873	0.92[EUR][1000 genomes]
rs35866593	0.92[EUR][1000 genomes]
rs35891284	0.92[EUR][1000 genomes]
rs36016296	0.92[EUR][1000 genomes]
rs36033343	0.92[EUR][1000 genomes]
rs36113794	0.80[EUR][1000 genomes]
rs4338039	0.92[EUR][1000 genomes]
rs4731567	0.82[AFR][1000 genomes]
rs6467234	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs6467236	0.83[AFR][1000 genomes]
rs6467239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949882	0.81[AFR][1000 genomes]
rs6950279	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs6970267	0.81[AFR][1000 genomes]
rs71529418	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71577835	0.84[EUR][1000 genomes]
rs71577839	0.81[EUR][1000 genomes]
rs71577849	0.84[EUR][1000 genomes]
rs71577853	0.92[EUR][1000 genomes]
rs71577868	0.92[EUR][1000 genomes]
rs71577869	0.92[EUR][1000 genomes]
rs71577870	0.89[AFR][1000 genomes]
rs71577875	0.92[EUR][1000 genomes]
rs9641848	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525482	chr7:128890812-129045191	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv516498	chr7:128901429-129072024	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3331483	chr7:128918442-129082887	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv428508	chr7:128946738-129114691	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128945600-128966200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:128948000-128966600	Weak transcription	Pancreas	Pancrea
3	chr7:128948400-128964200	Weak transcription	Liver	Liver
4	chr7:128956000-128965000	Weak transcription	Primary T cells from cord blood	blood
5	chr7:128956000-128977400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:128956200-128971400	Weak transcription	Left Ventricle	heart
7	chr7:128956600-128966800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:128956800-128972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:128957600-128965000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:128958000-128981000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:128958800-128972000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:128960400-128973200	Weak transcription	Small Intestine	intestine
13	chr7:128962400-128965200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:128962400-128965600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:128963400-128964200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr7:128963400-128964400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr7:128963600-128965800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr7:128963600-128972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:128963800-128964200	ZNF genes & repeats	Ovary	ovary
20	chr7:128963800-128964600	Weak transcription	Fetal Kidney	kidney
21	chr7:128963800-128964800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:128963800-128964800	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr7:128963800-128965200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:128964000-128964200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:128964000-128964200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:128964000-128965000	Weak transcription	Primary B cells from cord blood	blood
27	chr7:128964000-128967400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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