Variant report

Variant	rs71577839
Chromosome Location	chr7:128876013-128876014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128863779..128867507-chr7:128873644..128876495,3	MCF-7	breast:
2	chr7:128873646..128876213-chr7:128883173..128885864,2	K562	blood:
3	chr7:128864543..128866836-chr7:128874671..128876224,2	K562	blood:
4	chr7:128870263..128873797-chr7:128875829..128878661,3	K562	blood:

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10249336	0.81[EUR][1000 genomes]
rs10255583	0.81[EUR][1000 genomes]
rs1061275	0.80[EUR][1000 genomes]
rs1061282	0.80[EUR][1000 genomes]
rs1061283	0.80[EUR][1000 genomes]
rs11975133	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12706870	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12706872	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12706873	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12706874	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12706876	0.85[AMR][1000 genomes]
rs12706877	0.85[AMR][1000 genomes]
rs12706879	0.85[AMR][1000 genomes]
rs13221770	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13224964	0.84[AMR][1000 genomes]
rs13225516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13226919	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13229264	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13235047	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13236334	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13240434	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13240872	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13241894	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13242728	0.80[EUR][1000 genomes]
rs13242765	0.80[EUR][1000 genomes]
rs13244886	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13245719	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13246455	0.85[AMR][1000 genomes]
rs2016607	0.80[EUR][1000 genomes]
rs2718099	0.81[EUR][1000 genomes]
rs34026893	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34100080	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34134934	1.00[AMR][1000 genomes]
rs34285950	0.85[AMR][1000 genomes]
rs34534484	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34535486	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34643315	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34651338	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34659337	1.00[AMR][1000 genomes]
rs34691806	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34698607	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34721141	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34783919	0.85[AMR][1000 genomes]
rs34853082	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34867290	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34890000	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34989446	0.80[EUR][1000 genomes]
rs35060087	0.85[AMR][1000 genomes]
rs35120382	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35195965	0.85[AMR][1000 genomes]
rs35239026	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35381790	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35386880	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35506900	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35552948	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35654453	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35678076	0.80[EUR][1000 genomes]
rs35695777	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35730873	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35866593	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35891284	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36016296	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36033343	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36113794	0.84[AMR][1000 genomes]
rs4338039	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6467239	0.81[EUR][1000 genomes]
rs71529418	0.81[EUR][1000 genomes]
rs71577835	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71577849	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71577853	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71577868	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71577869	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71577875	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:128866000-128902200	Weak transcription	Gastric	stomach
3	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
4	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
5	chr7:128866400-128899000	Weak transcription	Ovary	ovary
6	chr7:128866600-128879000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:128866600-128880200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:128866600-128880400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:128866800-128878000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:128867000-128884200	Weak transcription	Primary T cells from cord blood	blood
13	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
15	chr7:128867600-128885600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:128867800-128878400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:128867800-128880400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:128868000-128878400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:128868400-128880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:128868800-128877800	Weak transcription	GM12878-XiMat	blood
22	chr7:128869000-128880000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:128869800-128878000	Weak transcription	NHEK	skin
24	chr7:128869800-128880200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:128869800-128880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:128871800-128880200	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:128873400-128880000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:128875000-128876600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:128875200-128880200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:128875400-128876400	Strong transcription	Fetal Intestine Small	intestine

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