Variant report

Variant	rs13236334
Chromosome Location	chr7:128896885-128896886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128863759..128868024-chr7:128894474..128897636,4	MCF-7	breast:
2	chr7:128895520..128897910-chr7:128898805..128901095,3	K562	blood:
3	chr7:128886315..128888707-chr7:128895408..128897456,2	K562	blood:
4	chr7:128896827..128899208-chr7:128904608..128906454,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10249336	0.84[EUR][1000 genomes]
rs10255583	0.84[EUR][1000 genomes]
rs1061275	0.84[EUR][1000 genomes]
rs1061282	0.84[EUR][1000 genomes]
rs1061283	0.84[EUR][1000 genomes]
rs11975133	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12706870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706872	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12706873	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12706874	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12706876	0.85[AMR][1000 genomes]
rs12706877	0.85[AMR][1000 genomes]
rs12706879	0.85[AMR][1000 genomes]
rs13221770	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13223446	0.80[EUR][1000 genomes]
rs13224964	0.84[AMR][1000 genomes]
rs13225516	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13226919	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13229264	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13231139	0.80[EUR][1000 genomes]
rs13235047	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13240434	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13240872	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13241894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13242728	0.84[EUR][1000 genomes]
rs13242765	0.84[EUR][1000 genomes]
rs13244886	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13245719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13246455	0.85[AMR][1000 genomes]
rs2016607	0.84[EUR][1000 genomes]
rs2718099	0.84[EUR][1000 genomes]
rs34026893	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34100080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34134934	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34285950	0.85[AMR][1000 genomes]
rs34534484	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34535486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34643315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34651338	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34659337	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34691806	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34698607	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34721141	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34783919	0.85[AMR][1000 genomes]
rs34853082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34867290	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34890000	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34894139	0.80[EUR][1000 genomes]
rs34989446	0.84[EUR][1000 genomes]
rs35060087	0.85[AMR][1000 genomes]
rs35120382	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35195965	0.85[AMR][1000 genomes]
rs35239026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35381790	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35386880	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35506900	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35552948	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35654453	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35678076	0.84[EUR][1000 genomes]
rs35695777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35730873	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35866593	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35891284	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36016296	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36033343	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36113794	0.84[AMR][1000 genomes]
rs4338039	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6467239	0.84[EUR][1000 genomes]
rs71529418	0.84[EUR][1000 genomes]
rs71577835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71577839	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71577849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71577853	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71577868	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71577869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71577875	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3349195	chr7:128887559-128918489	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525482	chr7:128890812-129045191	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128902200	Weak transcription	Gastric	stomach
2	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
3	chr7:128866400-128899000	Weak transcription	Ovary	ovary
4	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
7	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:128878800-128897000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:128881000-128898800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:128882000-128899600	Weak transcription	Left Ventricle	heart
11	chr7:128884800-128898800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:128885600-128898600	Weak transcription	Brain Germinal Matrix	brain
13	chr7:128887200-128898600	Weak transcription	NHEK	skin
14	chr7:128890800-128897200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:128891200-128897000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:128892400-128897200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:128892400-128898600	Weak transcription	Brain Anterior Caudate	brain
18	chr7:128892600-128914200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:128892800-128897000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:128893200-128899000	Weak transcription	Psoas Muscle	Psoas
21	chr7:128895800-128898200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:128895800-128898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:128895800-128902200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:128896000-128897000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:128896000-128897000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:128896000-128897000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:128896000-128897200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:128896000-128898000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:128896600-128897600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:128896600-128898200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr7:128896800-128897400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:128896800-128897600	Enhancers	Primary hematopoietic stem cells	blood
33	chr7:128896800-128897800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr7:128896800-128899200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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