Variant report

Variant	rs10250714
Chromosome Location	chr7:78866540-78866541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10226131	1.00[AMR][1000 genomes]
rs10228881	1.00[AMR][1000 genomes]
rs10230275	1.00[AMR][1000 genomes]
rs10231173	1.00[AMR][1000 genomes]
rs10235466	1.00[AMR][1000 genomes]
rs10237279	1.00[AMR][1000 genomes]
rs10240656	1.00[AMR][1000 genomes]
rs10252300	1.00[AMR][1000 genomes]
rs10257558	1.00[AMR][1000 genomes]
rs10273372	1.00[AMR][1000 genomes]
rs11971813	1.00[AMR][1000 genomes]
rs1609277	1.00[AFR][1000 genomes]
rs17152210	1.00[AMR][1000 genomes]
rs17152233	1.00[AMR][1000 genomes]
rs17152236	1.00[AMR][1000 genomes]
rs17152241	1.00[AMR][1000 genomes]
rs17152270	1.00[AMR][1000 genomes]
rs17152299	1.00[AMR][1000 genomes]
rs2190180	1.00[AMR][1000 genomes]
rs28510832	1.00[AMR][1000 genomes]
rs6466609	1.00[AMR][1000 genomes]
rs6943765	1.00[AMR][1000 genomes]
rs73704153	1.00[AMR][1000 genomes]
rs7784630	1.00[AMR][1000 genomes]
rs7787005	1.00[AMR][1000 genomes]
rs7788719	0.94[AFR][1000 genomes]
rs7788723	1.00[AMR][1000 genomes]
rs7793442	1.00[AMR][1000 genomes]
rs7801718	1.00[AMR][1000 genomes]
rs7804010	1.00[AMR][1000 genomes]
rs7811812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757230	chr7:78801388-78887925	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759539	chr7:78801388-78887925	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78866000-78868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:78866000-78870000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:78866000-78870400	Weak transcription	Osteobl	bone
4	chr7:78866200-78868800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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