Variant report

Variant	rs10226131
Chromosome Location	chr7:78992464-78992465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10228881	1.00[AMR][1000 genomes]
rs10230275	1.00[AMR][1000 genomes]
rs10231173	1.00[AMR][1000 genomes]
rs10235466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237230	0.90[YRI][hapmap]
rs10237279	1.00[AMR][1000 genomes]
rs10240656	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250714	1.00[AMR][1000 genomes]
rs10252300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257558	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152210	1.00[AMR][1000 genomes]
rs17152233	1.00[AMR][1000 genomes]
rs17152236	1.00[AMR][1000 genomes]
rs17152241	1.00[AMR][1000 genomes]
rs17152270	1.00[AMR][1000 genomes]
rs17152299	1.00[AMR][1000 genomes]
rs17152485	1.00[AMR][1000 genomes]
rs2190180	1.00[AMR][1000 genomes]
rs28469849	1.00[AMR][1000 genomes]
rs28510832	1.00[AMR][1000 genomes]
rs6466609	1.00[AMR][1000 genomes]
rs6466652	1.00[AMR][1000 genomes]
rs6943036	0.90[YRI][hapmap]
rs6943765	1.00[AMR][1000 genomes]
rs73704153	1.00[AMR][1000 genomes]
rs7778407	1.00[AMR][1000 genomes]
rs7784630	1.00[AMR][1000 genomes]
rs7787005	1.00[AMR][1000 genomes]
rs7788723	1.00[AMR][1000 genomes]
rs7793442	1.00[AMR][1000 genomes]
rs7801718	1.00[AMR][1000 genomes]
rs7804010	1.00[AMR][1000 genomes]
rs7811812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464600	chr7:78981719-79030922	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv607663	chr7:78981719-79030922	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv888513	chr7:78983840-79023504	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888514	chr7:78987060-79061837	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78992000-78992600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:78992400-78993400	Weak transcription	Liver	Liver

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