Variant report

Variant	rs6466652
Chromosome Location	chr7:79070591-79070592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226131	1.00[AMR][1000 genomes]
rs10228881	1.00[AMR][1000 genomes]
rs10230275	1.00[AMR][1000 genomes]
rs10231173	1.00[AMR][1000 genomes]
rs10235466	1.00[AMR][1000 genomes]
rs10237279	1.00[AMR][1000 genomes]
rs10240656	1.00[AMR][1000 genomes]
rs10252300	1.00[AMR][1000 genomes]
rs10257558	1.00[AMR][1000 genomes]
rs10273372	1.00[AMR][1000 genomes]
rs11971813	1.00[AMR][1000 genomes]
rs12111940	0.84[AFR][1000 genomes]
rs17152210	1.00[AMR][1000 genomes]
rs17152233	1.00[AMR][1000 genomes]
rs17152236	1.00[AMR][1000 genomes]
rs17152241	1.00[AMR][1000 genomes]
rs17152270	1.00[AMR][1000 genomes]
rs17152299	1.00[AMR][1000 genomes]
rs17152485	1.00[AMR][1000 genomes]
rs2190180	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469849	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28510832	1.00[AMR][1000 genomes]
rs6466609	1.00[AMR][1000 genomes]
rs6943765	1.00[AMR][1000 genomes]
rs6969169	0.84[AFR][1000 genomes]
rs6970599	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs6970901	0.85[YRI][hapmap]
rs73704153	1.00[AMR][1000 genomes]
rs7778407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784630	1.00[AMR][1000 genomes]
rs7787005	1.00[AMR][1000 genomes]
rs7788723	1.00[AMR][1000 genomes]
rs7793442	1.00[AMR][1000 genomes]
rs7801718	1.00[AMR][1000 genomes]
rs7804010	1.00[AMR][1000 genomes]
rs7811812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79064600-79071600	Weak transcription	NHDF-Ad	bronchial

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