Variant report

Variant	rs7793442
Chromosome Location	chr7:78967305-78967306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10226131	1.00[AMR][1000 genomes]
rs10228881	1.00[AMR][1000 genomes]
rs10230275	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10231173	1.00[AMR][1000 genomes]
rs10235466	1.00[AMR][1000 genomes]
rs10237279	1.00[AMR][1000 genomes]
rs10240656	1.00[AMR][1000 genomes]
rs10250714	1.00[AMR][1000 genomes]
rs10252300	1.00[AMR][1000 genomes]
rs10257558	1.00[AMR][1000 genomes]
rs10273372	1.00[AMR][1000 genomes]
rs11971813	1.00[AMR][1000 genomes]
rs17152210	1.00[AMR][1000 genomes]
rs17152233	1.00[AMR][1000 genomes]
rs17152236	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs17152241	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs17152270	1.00[AMR][1000 genomes]
rs17152299	1.00[AMR][1000 genomes]
rs17152485	1.00[AMR][1000 genomes]
rs2190180	1.00[AMR][1000 genomes]
rs28469849	1.00[AMR][1000 genomes]
rs28510832	1.00[AMR][1000 genomes]
rs6466609	1.00[AMR][1000 genomes]
rs6466652	1.00[AMR][1000 genomes]
rs6943765	1.00[AMR][1000 genomes]
rs73704153	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778407	1.00[AMR][1000 genomes]
rs7784630	1.00[AMR][1000 genomes]
rs7787005	1.00[AMR][1000 genomes]
rs7788723	1.00[AMR][1000 genomes]
rs7801718	1.00[AMR][1000 genomes]
rs7804010	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78961800-78969200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:78966600-78967600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:78966600-78967800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78967000-78967400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:78967000-78967400	Active TSS	Brain Angular Gyrus	brain
6	chr7:78967000-78967400	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr7:78967000-78967400	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr7:78967000-78967400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
9	chr7:78967000-78967400	Active TSS	Brain Substantia Nigra	brain
10	chr7:78967000-78967400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr7:78967000-78967600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:78967000-78967800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:78967200-78967400	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr7:78967200-78967400	Enhancers	HSMMtube	muscle
15	chr7:78967200-78967600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr7:78967200-78967600	Active TSS	Adipose Nuclei	Adipose
17	chr7:78967200-78967600	Active TSS	Brain Hippocampus Middle	brain

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