Variant report

Variant	rs10252248
Chromosome Location	chr7:118457589-118457590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118457044..118459465-chr7:118462059..118464961,2	MCF-7	breast:
2	chr7:118445682..118447696-chr7:118455521..118457653,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10241665	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10253760	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10256249	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10500069	0.88[EUR][1000 genomes]
rs1074111	0.87[EUR][1000 genomes]
rs10953873	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11763615	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12668910	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668926	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1320849	0.85[EUR][1000 genomes]
rs17141798	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17141814	0.87[EUR][1000 genomes]
rs1881870	0.88[EUR][1000 genomes]
rs2141558	0.80[EUR][1000 genomes]
rs2222817	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402424	0.87[EUR][1000 genomes]
rs2402442	0.90[EUR][1000 genomes]
rs2590651	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2590653	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2699731	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2699765	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2699772	0.85[EUR][1000 genomes]
rs5027260	0.82[EUR][1000 genomes]
rs59756920	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60203311	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60208831	0.88[EUR][1000 genomes]
rs60591081	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6946677	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6959236	0.88[EUR][1000 genomes]
rs6959271	0.88[EUR][1000 genomes]
rs6959301	0.87[EUR][1000 genomes]
rs73469804	0.88[EUR][1000 genomes]
rs73469807	0.88[EUR][1000 genomes]
rs73469810	0.88[EUR][1000 genomes]
rs73469815	0.87[EUR][1000 genomes]
rs73469820	0.87[EUR][1000 genomes]
rs73471513	0.82[EUR][1000 genomes]
rs73471514	0.82[EUR][1000 genomes]
rs73471520	0.81[EUR][1000 genomes]
rs73488328	0.88[EUR][1000 genomes]
rs7788712	0.82[EUR][1000 genomes]
rs879805	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831109	chr7:118300593-118501778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118456000-118458200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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