Variant report

Variant	rs6959271
Chromosome Location	chr7:118513585-118513586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118512499..118514711-chr7:118517595..118519435,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10241665	0.81[EUR][1000 genomes]
rs10252248	0.88[EUR][1000 genomes]
rs10253760	0.82[EUR][1000 genomes]
rs10256249	0.82[EUR][1000 genomes]
rs10500069	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1074111	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668910	0.92[EUR][1000 genomes]
rs12668926	0.92[EUR][1000 genomes]
rs1320849	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141798	0.92[EUR][1000 genomes]
rs17141814	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881870	0.95[EUR][1000 genomes]
rs2141558	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2222817	0.95[EUR][1000 genomes]
rs2402424	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402442	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2590653	0.81[EUR][1000 genomes]
rs2699731	0.81[EUR][1000 genomes]
rs2699765	0.84[EUR][1000 genomes]
rs2699772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279531	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5027260	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59756920	0.92[EUR][1000 genomes]
rs60203311	0.92[EUR][1000 genomes]
rs60208831	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60591081	0.95[EUR][1000 genomes]
rs6959236	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959301	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963484	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73469804	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73469807	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73469810	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73469815	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73469820	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73471513	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73471514	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73471520	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73488328	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788712	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs879805	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118512000-118513600	Enhancers	NHEK	skin
2	chr7:118512000-118514200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:118512600-118513800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:118512600-118514200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:118512600-118514200	Enhancers	HepG2	liver
6	chr7:118512600-118514400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:118512800-118514000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:118512800-118514200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:118513000-118513800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:118513000-118514000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:118513000-118515600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:118513400-118514400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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