Variant report

Variant	rs12668910
Chromosome Location	chr7:118494790-118494791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10241665	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10252248	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10256249	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10500069	0.92[EUR][1000 genomes]
rs1074111	0.90[EUR][1000 genomes]
rs10953873	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11763615	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12668926	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320849	0.89[EUR][1000 genomes]
rs17141798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141814	0.90[EUR][1000 genomes]
rs1881870	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2141558	0.84[EUR][1000 genomes]
rs2222817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2402424	0.90[EUR][1000 genomes]
rs2402442	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2590651	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590653	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699731	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699765	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2699772	0.89[EUR][1000 genomes]
rs4279531	0.82[EUR][1000 genomes]
rs5027260	0.85[EUR][1000 genomes]
rs59756920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60203311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60208831	0.92[EUR][1000 genomes]
rs60591081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6946677	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6959236	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6959271	0.92[EUR][1000 genomes]
rs6959301	0.91[EUR][1000 genomes]
rs73469804	0.92[EUR][1000 genomes]
rs73469807	0.92[EUR][1000 genomes]
rs73469810	0.92[EUR][1000 genomes]
rs73469815	0.90[EUR][1000 genomes]
rs73469820	0.90[EUR][1000 genomes]
rs73471513	0.85[EUR][1000 genomes]
rs73471514	0.85[EUR][1000 genomes]
rs73471520	0.84[EUR][1000 genomes]
rs73488328	0.92[EUR][1000 genomes]
rs7788712	0.85[EUR][1000 genomes]
rs879805	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831109	chr7:118300593-118501778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118493400-118495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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