Variant report
Variant | rs10252945 |
---|---|
Chromosome Location | chr7:18924850-18924851 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10253444 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10261390 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10261942 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs10274006 | 0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10276724 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10277631 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs11768780 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes] |
rs12700010 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13239610 | 0.88[EUR][1000 genomes] |
rs17350341 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.89[EUR][1000 genomes] |
rs17350397 | 0.83[EUR][1000 genomes] |
rs17350431 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes] |
rs2024022 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes] |
rs2190277 | 0.90[EUR][1000 genomes] |
rs2190278 | 0.83[CEU][hapmap];0.98[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes] |
rs2301950 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs71524255 | 0.88[EUR][1000 genomes] |
rs71524256 | 0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv498112 | chr7:18677922-18991946 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv887813 | chr7:18720135-18995552 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv523497 | chr7:18896011-18959381 | Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | esv2756248 | chr7:18911960-18977760 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1030062 | chr7:18915874-18943409 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:18903000-18940000 | Weak transcription | Aorta | Aorta |
2 | chr7:18906200-18929200 | Weak transcription | Left Ventricle | heart |