Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10252945	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10253444	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10261390	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10261942	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10274006	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10276724	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768780	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700010	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239610	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17350341	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17350383	0.83[ASN][1000 genomes]
rs17350397	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17350431	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2024022	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2190277	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2190278	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2301950	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34205559	0.88[ASN][1000 genomes]
rs71524255	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71524256	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18928800-18931200	Enhancers	Fetal Heart	heart
3	chr7:18929200-18931400	Enhancers	NHDF-Ad	bronchial
4	chr7:18929200-18931600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:18929400-18930800	Weak transcription	Adipose Nuclei	Adipose
6	chr7:18929400-18931000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:18929400-18931200	Enhancers	NHLF	lung
8	chr7:18929800-18930800	Weak transcription	Fetal Stomach	stomach
9	chr7:18929800-18931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:18929800-18931000	Enhancers	Stomach Smooth Muscle	stomach
11	chr7:18930000-18931200	Enhancers	Colon Smooth Muscle	Colon
12	chr7:18930000-18932800	Weak transcription	HMEC	breast
13	chr7:18930000-18934400	Weak transcription	Osteobl	bone
14	chr7:18930000-18934800	Weak transcription	HUVEC	blood vessel
15	chr7:18930200-18930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:18930200-18934800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:18930400-18931200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr7:18930400-18931200	Enhancers	Fetal Lung	lung
19	chr7:18930400-18931400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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