Variant report

Variant	rs1025331
Chromosome Location	chr7:26254521-26254522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26253560..26255433-chr7:26347806..26350350,2	K562	blood:
2	chr7:26248545..26251073-chr7:26252692..26255530,3	MCF-7	breast:
3	chr7:26249037..26251510-chr7:26254013..26255704,2	MCF-7	breast:
4	chr7:26251555..26253253-chr7:26253823..26256718,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233641	1.00[EUR][1000 genomes]
rs10236009	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10238831	0.81[EUR][1000 genomes]
rs10247665	1.00[EUR][1000 genomes]
rs10255851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11486821	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11971002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11974650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11983671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12700716	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269893	0.91[ASN][1000 genomes]
rs28520327	1.00[ASN][1000 genomes]
rs34876113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032567	1.00[EUR][1000 genomes]
rs3757672	0.87[ASN][1000 genomes]
rs6974645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71521751	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7803845	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:26245800-26257400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26245800-26263400	Weak transcription	Fetal Brain Male	brain
4	chr7:26250000-26254600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:26250200-26254600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:26250200-26256600	Weak transcription	Small Intestine	intestine
7	chr7:26250200-26263400	Weak transcription	Fetal Heart	heart
8	chr7:26250600-26256400	Weak transcription	Psoas Muscle	Psoas
9	chr7:26250800-26255000	Weak transcription	Fetal Stomach	stomach
10	chr7:26250800-26255800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:26251400-26257200	Weak transcription	HepG2	liver
12	chr7:26251600-26256000	Weak transcription	NHEK	skin
13	chr7:26251800-26254600	Weak transcription	NHDF-Ad	bronchial
14	chr7:26251800-26255200	Weak transcription	Left Ventricle	heart
15	chr7:26251800-26255400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:26251800-26257600	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:26252400-26254800	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:26252800-26254600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:26252800-26254600	Weak transcription	NH-A	brain
20	chr7:26252800-26254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:26252800-26254800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:26252800-26254800	Weak transcription	HUVEC	blood vessel
23	chr7:26252800-26255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:26252800-26255200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr7:26252800-26255200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr7:26252800-26255200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:26252800-26255200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:26252800-26255200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:26252800-26255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:26252800-26256200	Weak transcription	HSMMtube	muscle
31	chr7:26252800-26257000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:26252800-26263800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:26253000-26254600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:26253000-26254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:26253000-26254600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:26253000-26254600	Weak transcription	Primary T cells from cord blood	blood
37	chr7:26253000-26254600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr7:26253000-26254600	Weak transcription	Fetal Intestine Large	intestine
39	chr7:26253000-26254600	Weak transcription	Placenta	Placenta
40	chr7:26253000-26254600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:26253000-26254800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:26253000-26254800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:26253000-26254800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:26253000-26255000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:26253000-26255000	Weak transcription	Adipose Nuclei	Adipose
46	chr7:26253000-26256200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:26253200-26254800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:26253200-26254800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:26253200-26254800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:26253200-26255000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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