Variant report

Variant	rs36032567
Chromosome Location	chr7:26247074-26247075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:26246797-26247087	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:26246897-26247228	GM12878	blood:	n/a	n/a
3	POLR2A	chr7:26246392-26248135	K562	blood:	n/a	n/a
4	POLR2A	chr7:26247057-26247173	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26245433..26248011-chr7:26331906..26333789,2	K562	blood:
2	chr7:26245933..26247865-chr7:26330832..26332898,2	MCF-7	breast:

Variant related genes	Relation type
CBX3	TF binding region
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233641	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10236009	0.88[EUR][1000 genomes]
rs10238831	0.81[EUR][1000 genomes]
rs10247665	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1025331	1.00[EUR][1000 genomes]
rs10255851	1.00[EUR][1000 genomes]
rs11486821	1.00[EUR][1000 genomes]
rs11971002	0.88[EUR][1000 genomes]
rs11974650	0.88[EUR][1000 genomes]
rs11983671	1.00[EUR][1000 genomes]
rs12700716	0.93[EUR][1000 genomes]
rs2059903	0.98[ASN][1000 genomes]
rs34876113	1.00[EUR][1000 genomes]
rs6461919	0.83[ASN][1000 genomes]
rs6974645	1.00[EUR][1000 genomes]
rs6976408	0.83[ASN][1000 genomes]
rs71521751	0.88[EUR][1000 genomes]
rs7803845	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv887851	chr7:26236235-26248965	Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	140 gene(s)	inside rSNPs	n/a
4	nsv887853	chr7:26236933-26248965	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	140 gene(s)	inside rSNPs	n/a
5	nsv887854	chr7:26238100-26248965	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	136 gene(s)	inside rSNPs	n/a
6	esv3376986	chr7:26242542-26248102	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
7	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3370996	chr7:26245979-26248143	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	esv2390496	chr7:26245997-26248123	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
10	esv3401528	chr7:26246007-26248099	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
11	esv3328783	chr7:26246036-26248103	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
12	esv3400312	chr7:26246072-26248062	Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26242400-26249400	Weak transcription	Stomach Mucosa	stomach
2	chr7:26242600-26247200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:26242600-26247200	Weak transcription	Lung	lung
4	chr7:26242600-26249200	Weak transcription	Gastric	stomach
5	chr7:26242600-26249400	Weak transcription	Esophagus	oesophagus
6	chr7:26242800-26254000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:26243600-26249400	Weak transcription	Aorta	Aorta
8	chr7:26244200-26247200	Weak transcription	Psoas Muscle	Psoas
9	chr7:26244200-26250000	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:26244400-26248800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:26244400-26249200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:26244400-26251400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:26244800-26254200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr7:26245000-26248000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:26245000-26248800	Weak transcription	Brain Anterior Caudate	brain
17	chr7:26245200-26252800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:26245400-26250600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:26245400-26250800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:26245400-26252200	Strong transcription	Fetal Lung	lung
21	chr7:26245400-26252800	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr7:26245400-26252800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:26245400-26252800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:26245400-26252800	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr7:26245400-26253000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:26245400-26253000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:26245400-26253200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:26245400-26253200	Strong transcription	HSMM	muscle
29	chr7:26245400-26253600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:26245600-26247200	Weak transcription	Small Intestine	intestine
31	chr7:26245600-26247600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
32	chr7:26245600-26247800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:26245600-26248000	Genic enhancers	HUVEC	blood vessel
34	chr7:26245600-26250200	Strong transcription	Colonic Mucosa	Colon
35	chr7:26245600-26251800	Strong transcription	Fetal Muscle Leg	muscle
36	chr7:26245600-26251800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:26245600-26253000	Strong transcription	Fetal Intestine Large	intestine
38	chr7:26245600-26253200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:26245600-26253600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:26245600-26253600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:26245600-26253600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:26245600-26253800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:26245800-26248000	Strong transcription	Fetal Kidney	kidney
44	chr7:26245800-26250200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:26245800-26252600	Strong transcription	HMEC	breast
46	chr7:26245800-26252800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr7:26245800-26252800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:26245800-26252800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:26245800-26252800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:26245800-26252800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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