Variant report

Variant	rs12700716
Chromosome Location	chr7:26259430-26259431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10233641	0.93[EUR][1000 genomes]
rs10236009	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10238831	0.81[EUR][1000 genomes]
rs10247665	0.93[EUR][1000 genomes]
rs1025331	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255851	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11486821	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11971002	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11974650	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11983671	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2269893	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28520327	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34876113	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032567	0.93[EUR][1000 genomes]
rs3757672	0.87[ASN][1000 genomes]
rs6974645	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71521751	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7803845	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:26245800-26263400	Weak transcription	Fetal Brain Male	brain
3	chr7:26250200-26263400	Weak transcription	Fetal Heart	heart
4	chr7:26252800-26263800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:26253200-26263800	Weak transcription	Brain Germinal Matrix	brain
6	chr7:26253600-26263600	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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