Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr7:39770401-39774670	SK-N-SH	brain:	n/a	chr7:39773044-39773059

No.	Distal block	Cell Line	Cell type
1	chr7:39613001..39614812-chr7:39768164..39770870,2	K562	blood:
2	chr7:39661063..39664836-chr7:39769831..39775766,6	MCF-7	breast:
3	chr7:39744986..39746903-chr7:39768922..39771853,2	K562	blood:

Variant related genes	Relation type
LINC00265	TF binding region
ENSG00000006451	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10267545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486803	0.83[ASN][1000 genomes]
rs10486805	1.00[ASN][1000 genomes]
rs11765970	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11773617	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12668144	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701754	0.85[EUR][1000 genomes]
rs12701755	0.83[ASN][1000 genomes]
rs12701756	1.00[ASN][1000 genomes]
rs12701757	1.00[ASN][1000 genomes]
rs12701759	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13244194	0.89[EUR][1000 genomes]
rs13247563	0.83[ASN][1000 genomes]
rs17417049	0.83[ASN][1000 genomes]
rs17417084	0.83[ASN][1000 genomes]
rs34063025	0.83[ASN][1000 genomes]
rs34910913	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35314132	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35774126	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3779200	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62453003	0.83[EUR][1000 genomes]
rs6462940	0.83[ASN][1000 genomes]
rs6968684	0.83[ASN][1000 genomes]
rs6976944	0.83[ASN][1000 genomes]
rs6977082	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7778955	1.00[ASN][1000 genomes]
rs7779169	1.00[ASN][1000 genomes]
rs7782931	0.83[EUR][1000 genomes]
rs7792940	0.83[ASN][1000 genomes]
rs7797693	1.00[ASN][1000 genomes]
rs9648483	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39763000-39772400	Weak transcription	Right Atrium	heart
2	chr7:39764800-39771800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:39766400-39772000	Weak transcription	K562	blood
4	chr7:39767800-39771800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:39768000-39771800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:39768000-39771800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:39769000-39771200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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