Variant report

Variant	rs7779169
Chromosome Location	chr7:39761549-39761550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:39630501..39633434-chr7:39759020..39762831,5	K562	blood:
2	chr7:39760057..39765659-chr7:39765782..39774778,12	K562	blood:
3	chr7:39716806..39718805-chr7:39760155..39761984,2	K562	blood:
4	chr7:39697844..39699829-chr7:39759514..39761645,2	K562	blood:
5	chr7:39663291..39665233-chr7:39760119..39761834,2	K562	blood:
6	chr10:99256788..99259033-chr7:39760134..39761993,2	K562	blood:
7	chr7:39747835..39755058-chr7:39757872..39764388,13	K562	blood:
8	chr7:39678848..39680622-chr7:39760404..39763010,2	K562	blood:
9	chr7:39732340..39735300-chr7:39760265..39762340,2	K562	blood:
10	chr7:39661377..39663200-chr7:39760354..39762194,2	K562	blood:
11	chr7:39660254..39665233-chr7:39756811..39764394,13	K562	blood:
12	chr7:39759344..39763475-chr7:39764953..39775706,19	K562	blood:
13	chr7:39760407..39761969-chr7:39866612..39869320,2	K562	blood:
14	chr7:39604771..39607441-chr7:39760385..39762790,2	K562	blood:
15	chr7:39745397..39755065-chr7:39757582..39762895,14	K562	blood:
16	chr7:39728709..39730955-chr7:39759969..39761928,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000006451	Chromatin interaction
ENSG00000188185	Chromatin interaction
ENSG00000227172	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000241127	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10253933	1.00[ASN][1000 genomes]
rs10267545	1.00[ASN][1000 genomes]
rs10486803	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486805	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765970	0.95[ASN][1000 genomes]
rs11773617	0.95[ASN][1000 genomes]
rs12668144	0.83[ASN][1000 genomes]
rs12669963	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12701755	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12701756	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701757	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701759	0.95[ASN][1000 genomes]
rs13247563	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17417049	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17417084	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34063025	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34910913	0.95[ASN][1000 genomes]
rs35314132	0.96[ASN][1000 genomes]
rs35774126	0.83[ASN][1000 genomes]
rs35943406	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3779200	0.83[ASN][1000 genomes]
rs6462940	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6968684	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6976944	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6977082	0.83[ASN][1000 genomes]
rs7778955	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792940	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7797693	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648483	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39759400-39761800	Enhancers	Placenta	Placenta
2	chr7:39760000-39761800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:39760000-39761800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:39760800-39762200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:39760800-39762800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:39761000-39762600	Active TSS	K562	blood
7	chr7:39761000-39762800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:39761200-39761600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:39761200-39762000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:39761200-39762800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:39761200-39764400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:39761400-39761800	Active TSS	HUES64 Cell Line	embryonic stem cell

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