Variant report

Variant	rs35774126
Chromosome Location	chr7:39667601-39667602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39666780..39669048-chr7:39669920..39673887,3	MCF-7	breast:
2	chr7:39660345..39662229-chr7:39666445..39668711,2	MCF-7	breast:
3	chr7:39650430..39653003-chr7:39667356..39670007,2	K562	blood:
4	chr7:39665096..39667977-chr7:39762089..39764682,3	K562	blood:
5	chr7:39659213..39661444-chr7:39666943..39669270,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10253933	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10267545	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486803	1.00[ASN][1000 genomes]
rs10486805	0.83[ASN][1000 genomes]
rs11765970	0.83[EUR][1000 genomes]
rs11773617	0.84[EUR][1000 genomes]
rs12668144	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669963	0.87[ASN][1000 genomes]
rs12701754	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12701755	1.00[ASN][1000 genomes]
rs12701756	0.83[ASN][1000 genomes]
rs12701757	0.83[ASN][1000 genomes]
rs12701759	0.82[EUR][1000 genomes]
rs13244194	0.88[EUR][1000 genomes]
rs13247563	1.00[ASN][1000 genomes]
rs17417049	1.00[ASN][1000 genomes]
rs17417084	1.00[ASN][1000 genomes]
rs34063025	1.00[ASN][1000 genomes]
rs34910913	0.91[EUR][1000 genomes]
rs35314132	0.90[EUR][1000 genomes]
rs3779200	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62453003	0.82[EUR][1000 genomes]
rs6462940	1.00[ASN][1000 genomes]
rs6968684	1.00[ASN][1000 genomes]
rs6976944	1.00[ASN][1000 genomes]
rs6977082	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778955	0.83[ASN][1000 genomes]
rs7779169	0.83[ASN][1000 genomes]
rs7782931	0.82[EUR][1000 genomes]
rs7792940	1.00[ASN][1000 genomes]
rs7797693	0.83[ASN][1000 genomes]
rs9648483	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv887972	chr7:39666267-39733688	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39664400-39667800	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr7:39664400-39668000	Enhancers	Stomach Mucosa	stomach
3	chr7:39664400-39668400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr7:39664400-39669000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:39664400-39670000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:39664400-39672200	Weak transcription	Pancreas	Pancrea
7	chr7:39664400-39674600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:39664400-39674600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:39664400-39674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:39664400-39678400	Weak transcription	Placenta	Placenta
11	chr7:39664400-39679600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:39664600-39668400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:39664800-39667800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:39664800-39668000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:39664800-39668000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:39664800-39671000	Weak transcription	Gastric	stomach
17	chr7:39664800-39671400	Weak transcription	Fetal Thymus	thymus
18	chr7:39664800-39671400	Weak transcription	Spleen	Spleen
19	chr7:39664800-39671600	Weak transcription	Aorta	Aorta
20	chr7:39664800-39673200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:39665000-39668000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:39665000-39669800	Weak transcription	Primary B cells from cord blood	blood
23	chr7:39665000-39673600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr7:39665200-39668000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:39665200-39668000	Enhancers	Hela-S3	cervix
26	chr7:39665200-39668400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:39665200-39668600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:39665200-39669000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:39665200-39669400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:39665200-39669600	Weak transcription	Fetal Stomach	stomach
31	chr7:39665200-39670000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:39665200-39671400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:39665200-39672000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:39665200-39672600	Weak transcription	Thymus	Thymus
35	chr7:39665200-39677800	Weak transcription	Brain Substantia Nigra	brain
36	chr7:39665400-39668000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:39665400-39669600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr7:39665400-39671200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr7:39665400-39672200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:39665400-39679800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:39665600-39668200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:39665600-39673400	Weak transcription	Colon Smooth Muscle	Colon
43	chr7:39665600-39680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:39665600-39682200	Weak transcription	Liver	Liver
45	chr7:39666000-39667800	Enhancers	Small Intestine	intestine
46	chr7:39666000-39668000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:39666000-39669800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:39666200-39667800	Enhancers	NHDF-Ad	bronchial
49	chr7:39666200-39668000	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr7:39666200-39669000	Weak transcription	Fetal Intestine Small	intestine

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