Variant report

Variant	rs10256224
Chromosome Location	chr7:25937340-25937341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10272701	0.94[EUR][1000 genomes]
rs10280127	0.87[EUR][1000 genomes]
rs12670612	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1451387	0.93[EUR][1000 genomes]
rs17152839	0.86[EUR][1000 genomes]
rs28411031	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28583529	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25935400-25939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:25935400-25939600	Weak transcription	Fetal Kidney	kidney
3	chr7:25935800-25938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:25936600-25937400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr7:25936600-25937400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:25936600-25937400	Enhancers	Fetal Lung	lung
7	chr7:25936800-25937400	Enhancers	Liver	Liver
8	chr7:25936800-25937400	Enhancers	GM12878-XiMat	blood
9	chr7:25936800-25937600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:25937000-25937400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:25937000-25937400	Enhancers	Fetal Thymus	thymus
12	chr7:25937000-25937600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:25937000-25937600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:25937000-25940200	Weak transcription	Adipose Nuclei	Adipose
15	chr7:25937200-25937400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:25937200-25937400	Enhancers	Ovary	ovary
17	chr7:25937200-25937600	Enhancers	K562	blood
18	chr7:25937200-25940200	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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