Variant report

Variant	rs28583529
Chromosome Location	chr7:25929820-25929821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10256224	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10272701	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10280127	0.89[EUR][1000 genomes]
rs12666194	0.87[ASN][1000 genomes]
rs12670612	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1451387	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152839	0.87[EUR][1000 genomes]
rs28411031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25921600-25934000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:25922000-25934800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:25926800-25932200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:25926800-25932600	Weak transcription	GM12878-XiMat	blood
5	chr7:25927200-25932600	Weak transcription	Right Atrium	heart
6	chr7:25928600-25930600	Enhancers	Fetal Thymus	thymus
7	chr7:25929000-25930000	Enhancers	Fetal Heart	heart
8	chr7:25929400-25930000	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr7:25929600-25930000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:25929800-25930000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:25929800-25930000	Enhancers	Thymus	Thymus
12	chr7:25929800-25930000	Bivalent Enhancer	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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