Variant report

Variant	rs12666194
Chromosome Location	chr7:25936843-25936844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000199085	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000270933	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10245705	1.00[CEU][hapmap]
rs12670612	0.89[ASN][1000 genomes]
rs1451387	0.80[ASN][1000 genomes]
rs28411031	0.87[ASN][1000 genomes]
rs28583529	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25935400-25939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:25935400-25939600	Weak transcription	Fetal Kidney	kidney
3	chr7:25935800-25938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:25936600-25937200	Flanking Active TSS	K562	blood
5	chr7:25936600-25937400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr7:25936600-25937400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:25936600-25937400	Enhancers	Fetal Lung	lung
8	chr7:25936800-25937000	Enhancers	Adipose Nuclei	Adipose
9	chr7:25936800-25937200	Enhancers	Brain Germinal Matrix	brain
10	chr7:25936800-25937200	Flanking Active TSS	Ovary	ovary
11	chr7:25936800-25937200	Enhancers	Pancreas	Pancrea
12	chr7:25936800-25937400	Enhancers	Liver	Liver
13	chr7:25936800-25937400	Enhancers	GM12878-XiMat	blood
14	chr7:25936800-25937600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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