Variant report

Variant	rs10257516
Chromosome Location	chr7:39303142-39303143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11761411	0.84[CHB][hapmap]
rs11773042	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs6462906	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39293800-39310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39299200-39304600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:39299200-39304600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:39299600-39304800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:39299800-39304000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:39299800-39305800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:39300200-39303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:39300400-39305200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:39301000-39310600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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