Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10257516	0.84[CHB][hapmap]
rs10951600	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10951601	0.84[CEU][hapmap]
rs10951602	0.84[CEU][hapmap]
rs11760438	0.80[CEU][hapmap]
rs11768007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530511	0.90[EUR][1000 genomes]
rs12533451	0.84[CEU][hapmap]
rs12537044	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17619162	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2074935	0.84[CEU][hapmap]
rs2074937	0.84[CEU][hapmap]
rs2299139	0.84[CEU][hapmap]
rs3823619	0.84[CEU][hapmap]
rs4524676	0.81[CEU][hapmap]
rs4551241	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60803367	0.95[EUR][1000 genomes]
rs73118050	0.97[EUR][1000 genomes]
rs73126485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73126501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73128428	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73130437	0.97[EUR][1000 genomes]
rs73130461	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39293800-39310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39299200-39304600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:39299200-39304600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:39299600-39304800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:39299800-39304000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:39299800-39305800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:39300400-39305200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:39301000-39310600	Weak transcription	Fetal Brain Male	brain
9	chr7:39303200-39304200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:39303600-39303800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:39303600-39304000	Enhancers	H1 Cell Line	embryonic stem cell

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