Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10951601	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10951602	0.83[CEU][hapmap]
rs11761411	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11768007	0.95[EUR][1000 genomes]
rs12530511	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12533451	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs12537044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17619162	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs2074935	0.84[CEU][hapmap]
rs2074937	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2299139	0.83[CEU][hapmap]
rs3823619	0.84[CEU][hapmap]
rs4524676	0.81[CEU][hapmap]
rs4551241	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs59663839	0.82[EUR][1000 genomes]
rs60803367	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462906	0.90[ASN][1000 genomes]
rs73118050	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73121835	0.82[EUR][1000 genomes]
rs73126485	0.94[EUR][1000 genomes]
rs73126501	0.95[EUR][1000 genomes]
rs73128428	0.94[EUR][1000 genomes]
rs73130437	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73130461	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39350600-39358400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:39354800-39358800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:39355000-39356400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:39355000-39356600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:39355200-39356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:39355200-39356400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:39355200-39357600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:39355400-39356600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:39355400-39359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:39355600-39355800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:39355600-39356200	Enhancers	Colon Smooth Muscle	Colon

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